PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g07800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 368aa    MW: 38789.7 Da    PI: 6.7964
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g07800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20161210255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Vang06g07800.1 161 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 210
                     7********.**********7.....337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-38161224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-33161219IPR001471AP2/ERF domain
PfamPF008473.0E-14161210IPR001471AP2/ERF domain
PROSITE profilePS5103225.712161218IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22161219IPR016177DNA-binding domain
PRINTSPR003679.1E-12162173IPR001471AP2/ERF domain
CDDcd000186.94E-15169220No hitNo description
PRINTSPR003679.1E-12184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEEASPCTCR PPVERIINSI GSHVCITVAH RRPSASGSAS GNFAADPGGQ EDPEEPFTPR  60
DVQVQGGTVG SVPTHVVSPS SSAQTNTKWV PASGFPMLPR FMHAPSPGLS SSPGPPLLGS  120
GSVGQKRTRE DDTAAAASGG EGEGGSSRSA SQEESGERRR RYRGVRQRPW GKWAAEIRDP  180
HKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEN VTAVRPPHLP DFPATSLSGS  240
GDVPAVTGYS PTVMQGAPLQ SSPDLLRDYW GYSQLLRSTG EFHGLDQWFY DSQMAALQSS  300
SSSLLPLPPA YAPSSASFPL FSSQQMGAFR PPGQQHHGGG DSGNGSEFPP SSWSDTSSYP  360
PPPPPPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-22162222667ATERF1
2gcc_A1e-22162222667ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512914.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0S3SNJ90.0A0A0S3SNJ9_PHAAN; Uncharacterized protein
STRINGGLYMA20G30835.11e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-21related to AP2 6